Photo de HABENSTEIN Birgit

HABENSTEIN Birgit

  • Directeur.rice de Recherche CNRS
  • Unité d'accueil : UMR5248 CBMN
    www.cbmn.u-bordeaux.fr
  • 0540002245
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Institut de Chimie & biologie des Membranes & des Nano-objets Groupement d’Etudes de Résonance Magnétique

My research focuses on the molecular structures and mechanisms of biomolecular assemblies at the atomic scale using and developing as major technology solid-state NMR, complemented by solution NMR and other biophysical approaches. 

One research axis concerns membrane binding proteins containing short membrane anchors, that confer nanodomain formation, i.e. dynamic lipid and protein clustering in the membrane, such as the plant protein remorin. For these proteins, the analysis of structures and interactions remains a challenge because of their intrinsic dynamic nature and the subtle interactions that guide protein condensation and nanodomain formation on the membrane. Solid-state NMR is a powerful tool to obtain information on these complex systems at an atomic scale and perfectly suited to complement bioinformatics and diverse experimental approaches. The example of the plant protein remorin explicits well the challenges that arise from peripheral membrane-binding protein structures. As for now, we could show that Solanum tuberosum remorins bind

preferentially to phosphatidylinositolphosphates (PIPs) over the C-terminal membrane anchor and they confer nanodomain clustering over their lipid membrane binding characteristics, coiled-coil oligomerization behaviour and phosphorylation status of the intrinsically disordered domain. However, many questions to define family-dependent structural determinants, nanodomain clustering characteristics and remorin's potential to oligomerize and condensate remain unsolved. 
 
Another major research axis concerns protein assemblies such as found in amyloid aggregates or molecular machines. Amyloids are a intriguing protein species that can either contribute to detrimental cellular disfunctioning such as in (neuro-)degenerative diseases or play essential functional roles, relying on their potential to assemble into highly stable amyloids. The characteristics of amyloids reside in the underlying molecular beta-strand arrangement that results in unbranched filaments with several nanometer width and undefined length. A favorable beta-sheet assembly approximately perpendicular to the filament axis can further stabilise the fibers. In line with the versatile and stable resulting structure, these molecular objects provide specific templating mechanisms as we have shown for the amyloid prion HELLF, involved in cell death signalling in the filamentous fungus Podospora anserina. For instance, using mainly solid-state NMR, we have demonstrated its capacity of sequence-selectively templating its beta solenoid amyloid structure without respecting structural similarities imposed by structurally equivalent templates.
 
Figure: 13C-13C proton-driven spin diffusion (PDSD) solid-state NMR spectrum of the model prion amyloid HET-s recorded at 18.8 Tesla (800 MHz proton frequency). Atomic inter-residual contacts that can arise are depicted on the structures and as yellow and cyan dots in the panels on the lower and right side of the PDSD spectrum, respectively (adapted from doi:10.1016/j.ymeth.2018.03.014).
 


Main Publications

Structural determinants of REMORIN nanodomain formation in anionic membranes.
Legrand A, G-Cava D, Jolivet MD, Decossas M, Lambert O, Bayle V, Jaillais Y, Loquet A, Germain V, Boudsocq M, Habenstein B, Vélez Tirado M, Mongrand S.
Biophys J. 2022 Dec 28:S0006-3495(22)03964-9. doi: 10.1016/j.bpj.2022.12.035.

Structural and molecular basis of cross-seeding barriers in amyloids.
Daskalov A, Martinez D, Coustou V, El Mammeri N, Berbon M, Andreas LB, Bardiaux B, Stanek J, Noubhani A, Kauffmann B, Wall JS, Pintacuda G#, Saupe SJ, Habenstein B, Loquet A.
Proc Natl Acad Sci U S A. 2021;118(1):e2014085118.

Flotillin-mediated membrane fluidity controls peptidoglycan synthesis and MreB movement.
Zielińska A, Savietto A, de Sousa Borges A, Martinez D, Berbon M, Roelofsen JR, Hartman AM, de Boer R, Van der Klei IJ, Hirsch AK, Habenstein B, Bramkamp M, Scheffers DJ.
Elife. 2020;9:e57179

Structural dissection of amyloid aggregates of TDP-43 and its C-terminal fragments TDP-35 and TDP-16.
Shenoy J, El Mammeri N, Dutour A, Berbon M, Saad A, Lends A, Morvan E, Grélard A, Lecomte S, Kauffmann B, Theillet FX, Habenstein B#, Loquet A. #
FEBS J. 2020;287(12):2449-2467

Structural features of the interaction of MapZ with FtsZ and membranes in Streptococcus pneumoniae.
Hosek T, Bougault CM, Lavergne JP, Martinez D, Ayala I, Fenel D, Restelli M, Morlot C, Habenstein B, Grangeasse C, Simorre JP.
Sci Rep. 2020;10(1):4051

Biographie

  • 2022   Research Scientist (CR CNRS), PI

  • 2020-2022 Managing director VDE DGBMT, Francfort
  • 2015   Research Scientist (CR CNRS), PI
  • 2014   ANR research associate (ANR RPDOC), CBMN (CNRS UMR5248) group of Dr. Erick Dufourc
  • 2012 – 2014   EMBO Long-Term Postdoctoral Fellow, MPI for Biophysical Chemistry, Goettingen with Prof. Adam Lange   
  • 2011   Postdoctoral fellow, ETH Zürich (Switzerland) with Prof. Beat H. Meier
  • 2008 – 2011   Ph.D. in biophysics, IBCP Lyon (France) with Dr. Anja Böckmann
  • 2008   Research assistant, ETH Zürich (Switzerland) with Prof. B.H. Meier
  • 2007 – 2008   Research assistant, IBCP Lyon (France) with Dr. A. Böckmann
  • 2002 –2007   Master in biotechnology, TU Berlin (Germany) / INSA Lyon (France)

Dernières publications

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